STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57378.1Dye decolorizing peroxidase. (409 aa)    
Predicted Functional Partners:
SCL57376.1
Hypothetical protein.
 
    0.984
SCL57382.1
Hypothetical protein.
 
    0.938
SCL58485.1
Hypothetical protein.
 
    0.934
SCL58482.1
Hypothetical protein.
 
    0.754
SCL50504.1
Copper transport protein.
 
  
 0.690
SCL60366.1
Hypothetical protein.
 
    0.675
SCL57385.1
Iron complex transport system substrate-binding protein.
  
    0.673
accA
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 
  0.672
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.591
SCL48051.1
Uncharacterized iron-regulated membrane protein.
    0.563
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.