STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57527.1Repeat domain-containing protein. (629 aa)    
Predicted Functional Partners:
SCL57524.1
Protein of unknown function.
 
  
  0.991
SCL57531.1
Hypothetical protein.
 
  
  0.990
SCL57538.1
Enediyne biosynthesis thioesterase.
 
    0.925
SCL57535.1
Enediyne polyketide synthase.
 
     0.914
SCL57552.1
Hypothetical protein.
 
     0.791
SCL52880.1
Cytochrome P450.
  
  
  0.770
SCL46951.1
Signal transduction histidine kinase.
  
 
 0.702
SCL48249.1
GTP cyclohydrolase II.
    
  0.696
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.696
SCL47558.1
TPR repeat-containing protein.
  
 
 0.692
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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