STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57581.1Methyltransferase domain-containing protein. (378 aa)    
Predicted Functional Partners:
SCL57600.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.741
SCL57586.1
Predicted ester cyclase.
       0.737
SCL57589.1
Alpha/beta hydrolase fold.
       0.721
SCL57594.1
TAP-like protein.
       0.721
SCL57605.1
SnoaL-like polyketide cyclase.
       0.692
SCL57580.1
Ubiquinone biosynthesis protein.
  
 
 0.666
SCL62916.1
Sulfate adenylyltransferase.
    
 0.646
SCL57575.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
  0.642
SCL53192.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.617
SCL45350.1
Transcriptional attenuator, LytR family.
  
 
  0.597
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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