STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57642.1Catechol 2,3-dioxygenase. (140 aa)    
Predicted Functional Partners:
SCL59140.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
  
  0.703
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.658
SCL57632.1
DNA-binding transcriptional regulator, ArsR family.
 
     0.642
SCL57639.1
Catechol 2,3-dioxygenase.
 
  
 
0.631
SCL51181.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.582
SCL57624.1
ABC-2 type transport system permease protein.
       0.536
SCL57628.1
ABC-2 type transport system ATP-binding protein.
       0.536
SCL54525.1
Acyl transferase domain-containing protein.
  
 0.518
SCL58046.1
Acyl transferase domain-containing protein.
  
 0.518
SCL59143.1
AraC-type DNA-binding protein.
  
     0.494
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.