STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57656.1OST-HTH/LOTUS domain-containing protein. (341 aa)    
Predicted Functional Partners:
SCL48724.1
NYN domain-containing protein.
  
     0.646
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.587
SCL51751.1
Putative sensory transduction regulator.
  
     0.583
SCL57659.1
Endonuclease/Exonuclease/phosphatase family protein.
       0.488
SCL57661.1
Polyketide cyclase / dehydrase and lipid transport.
       0.479
SCL56506.1
Diguanylate Cyclase and Two-component system sensory domain-containing protein.
  
     0.448
SCL52605.1
Protein of unknown function.
  
     0.443
SCL59853.1
DNA polymerase-3 subunit epsilon.
   
   0.432
SCL52195.1
Putative ABC transport system permease protein.
  
   0.425
SCL54931.1
ABC-2 type transport system permease protein.
  
     0.420
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.