STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57686.1Snapalysin. (398 aa)    
Predicted Functional Partners:
SCL47081.1
Zinc carboxypeptidase.
  
 0.770
SCL57047.1
Hypothetical protein.
    
 0.756
SCL46600.1
Hypothetical protein.
  
 
  0.701
SCL48977.1
Secreted trypsin-like serine protease.
  
     0.687
SCL55167.1
alpha-L-fucosidase 2.
   
  0.684
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.671
SCL50234.1
Hypothetical protein.
    
  0.651
SCL57121.1
Hypothetical protein.
    
  0.651
SCL57142.1
Zinc carboxypeptidase.
  
 0.651
SCL60224.1
Zinc carboxypeptidase.
  
 0.651
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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