STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57692.1S-formylglutathione hydrolase FrmB. (312 aa)    
Predicted Functional Partners:
SCL57253.1
S-(hydroxymethyl)mycothiol dehydrogenase.
 
 0.949
SCL58155.1
Alcohol dehydrogenase.
 
 0.949
SCL56060.1
Thioesterase domain-containing protein.
  
 0.857
SCL47741.1
DNA-binding transcriptional regulator, FrmR family.
  
  
 0.775
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.771
SCL56057.1
Phosphopantetheine attachment site.
  
 
 0.699
SCL54477.1
Diacylglycerol kinase (ATP).
  
  
  0.698
SCL55167.1
alpha-L-fucosidase 2.
 
  
 0.693
SCL64081.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
  0.644
SCL63229.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Manually curated; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.599
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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