STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57856.1Hypothetical protein. (174 aa)    
Predicted Functional Partners:
SCL57859.1
Hypothetical protein.
 
     0.947
SCL57852.1
Hypothetical protein.
 
    0.903
SCL57863.1
Hypothetical protein.
 
     0.835
SCL65326.1
Hypothetical protein.
 
     0.771
SCL65333.1
Hypothetical protein.
  
    0.768
SCL58275.1
Hypothetical protein.
  
     0.590
SCL52538.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
    0.587
SCL65533.1
Arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent.
  
     0.583
SCL57432.1
6-O-methylguanine DNA methyltransferase, DNA binding domain.
 
     0.520
SCL57442.1
Tetratricopeptide repeat-containing protein.
  
     0.501
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.