STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL58086.1Alpha-tubulin suppressor. (410 aa)    
Predicted Functional Partners:
SCL51198.1
Protein tyrosine/serine phosphatase.
   
 
 0.951
SCL47248.1
NADH dehydrogenase subunit M.
    
 
 0.941
SCL63534.1
NADH dehydrogenase subunit M.
    
 
 0.941
SCL58784.1
Sulfate permease, SulP family.
    
   0.912
SCL60142.1
Sulfate permease, MFS superfamily.
    
   0.912
SCL57675.1
WD40 repeat.
  
 
 0.861
SCL61609.1
Cytochrome oxidase assembly protein ShyY1.
   
   0.850
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.850
SCL65393.1
Nucleoside phosphorylase.
   
 0.842
SCL46007.1
Peptidase inhibitor I9; Belongs to the peptidase S8 family.
  
 0.840
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.