STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL58203.1L-rhamnose mutarotase. (112 aa)    
Predicted Functional Partners:
SCL53398.1
Fucose permease.
  
  
 0.711
SCL58200.1
Methyltransferase domain-containing protein.
       0.678
SCL48037.1
L-fuconolactonase.
 
  
 0.617
SCL48917.1
Xylulokinase.
  
  
 0.523
SCL48920.1
Sugar (pentulose or hexulose) kinase.
  
  
 0.523
SCL50182.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
  
  
 0.523
SCL52698.1
Xylulokinase.
  
  
 0.523
SCL58624.1
Gluconokinase.
  
  
 0.523
SCL61093.1
Xylulokinase; Belongs to the FGGY kinase family.
  
  
 0.523
xylB
Xylulokinase.
  
  
 0.523
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.