STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL58449.1CubicO group peptidase, beta-lactamase class C family. (354 aa)    
Predicted Functional Partners:
SCL58457.1
Glycosyl hydrolases family 16.
 
     0.806
SCL58435.1
Glycosyl transferase family 2.
       0.773
SCL58439.1
Glycosyl transferase family 2.
       0.773
SCL58443.1
Hypothetical protein.
       0.773
SCL58447.1
Hypothetical protein.
       0.773
SCL58453.1
Glycosyl transferase family 2.
       0.773
SCL56060.1
Thioesterase domain-containing protein.
  
  
 0.674
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.622
SCL46110.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.546
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.530
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.