STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL58979.1Transcriptional regulator, TetR family. (190 aa)    
Predicted Functional Partners:
SCL51781.1
Phage shock protein A (PspA) family protein.
  
     0.734
SCL59773.1
Protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.703
SCL49638.1
Hypothetical protein.
  
     0.641
SCL62990.1
Chorismate mutase.
  
    0.619
SCL58982.1
TIGR04222 domain-containing protein.
 
     0.606
SCL58975.1
Putative hydrolase of the HAD superfamily.
       0.584
SCL58985.1
Hypothetical protein.
 
     0.584
SCL53976.1
PH domain-containing protein.
  
     0.556
SCL58989.1
Hypothetical protein.
       0.551
SCL52023.1
Protein of unknown function.
  
     0.541
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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