STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59038.1Fe-S cluster assembly ATP-binding protein. (257 aa)    
Predicted Functional Partners:
SCL59045.1
Iron-regulated ABC transporter permease protein SufD.
 
 
 0.999
SCL59048.1
Iron-regulated ABC transporter membrane component SufB.
 
 0.999
SCL59028.1
Nitrogen fixation protein NifU.
 
  
 0.994
SCL59033.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.993
SCL59025.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.963
SCL57371.1
Selenocysteine lyase/Cysteine desulfurase.
 
  
 0.927
SCL59041.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.893
SCL51465.1
isopenicillin-N epimerase.
 
  
 0.865
SCL53659.1
Selenocysteine lyase/Cysteine desulfurase.
 
  
 0.862
SCL59052.1
Predicted transcriptional regulator, ArsR family.
  
    0.807
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.