STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59143.1AraC-type DNA-binding protein. (148 aa)    
Predicted Functional Partners:
SCL59140.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.958
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.771
SCL46951.1
Signal transduction histidine kinase.
   
 
 0.753
SCL51109.1
Catechol 2,3-dioxygenase.
 
     0.750
SCL59368.1
Glutamate synthase (NADH) large subunit.
    
  0.677
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.662
SCL59145.1
Protein of unknown function.
       0.620
SCL59137.1
Excinuclease UvrABC ATPase subunit.
       0.606
SCL48249.1
GTP cyclohydrolase II.
    
  0.598
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.598
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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