STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59155.1Putative restriction endonuclease. (164 aa)    
Predicted Functional Partners:
SCL59153.1
Hypothetical protein.
       0.773
SCL59159.1
ATP-dependent DNA helicase RecQ.
       0.648
SCL63550.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.615
SCL51571.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.560
SCL59162.1
Hypothetical protein.
       0.555
SCL48466.1
Putative Flp pilus-assembly TadE/G-like.
  
     0.534
SCL59149.1
Helix-turn-helix domain-containing protein.
       0.482
SCL51415.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.480
SCL59145.1
Protein of unknown function.
       0.448
SCL48367.1
PrgI family protein.
  
     0.446
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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