STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59295.1Transcriptional regulator, AsnC family. (159 aa)    
Predicted Functional Partners:
SCL61546.1
Transcriptional regulator, AsnC family.
  
     0.771
SCL64739.1
Transcriptional regulator, AsnC family.
  
     0.768
SCL61591.1
uroporphyrinogen-III C-methyltransferase.
  
 
 0.654
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.649
SCL59293.1
Cystathionine gamma-synthase.
       0.579
SCL59299.1
Luciferase family oxidoreductase, group 1.
       0.521
SCL54161.1
Alanine dehydrogenase.
     
 0.512
SCL58628.1
Phenazine biosynthesis protein phzE.
   
 
  0.488
SCL65783.1
Phenazine biosynthesis protein phzE.
   
 
  0.488
SCL60800.1
Transcriptional regulator, AsnC family.
  
     0.434
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.