STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59309.1Hypothetical protein. (306 aa)    
Predicted Functional Partners:
SCL59311.1
Transcriptional regulator, BadM/Rrf2 family.
 
     0.552
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.475
SCL62472.1
Sirohydrochlorin ferrochelatase.
     
 0.469
SCL62482.1
Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
   
 0.450
SCL49024.1
Putative serine protease PepD.
    
 
 0.410
SCL51224.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
    
 
 0.410
SCL52135.1
Trypsin-like peptidase domain-containing protein.
    
 
 0.410
SCL62371.1
Putative serine protease PepD.
    
 
 0.410
SCL65005.1
Colicin V production protein.
    
 
 0.410
SCL62479.1
Hypothetical protein.
     
 0.400
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.