STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59311.1Transcriptional regulator, BadM/Rrf2 family. (191 aa)    
Predicted Functional Partners:
SCL59896.1
Cysteine desulfurase.
 
 
 0.639
SCL48530.1
Cysteine desulfurase.
  
 
 0.585
SCL51009.1
Cysteine desulfurase.
  
 
 0.585
SCL59309.1
Hypothetical protein.
 
     0.552
SCL59315.1
Serine/threonine protein kinase.
       0.552
SCL59320.1
acyl-CoA thioesterase-2.
       0.549
SCL59028.1
Nitrogen fixation protein NifU.
  
  
 0.548
SCL59323.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.515
SCL59317.1
Ca-activated chloride channel family protein.
       0.500
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.