STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59422.1TIGR03085 family protein. (209 aa)    
Predicted Functional Partners:
SCL56357.1
Formate dehydrogenase beta subunit.
  
 0.995
SCL59368.1
Glutamate synthase (NADH) large subunit.
  
 0.991
SCL59876.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
 
 0.982
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.958
SCL52894.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
 
 0.925
SCL59874.1
Menaquinol-cytochrome c reductase iron-sulfur subunit precursor.
  
 
 0.925
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.859
SCL62916.1
Sulfate adenylyltransferase.
     
 0.788
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.765
SCL57800.1
Ferredoxin-NADP reductase.
    
 0.765
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.