Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCL59422.1TIGR03085 family protein. (209 aa)    
Predicted Functional Partners:
SCL56357.1
Formate dehydrogenase beta subunit.
  
 0.973
SCL59876.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
 
 0.930
SCL59368.1
Glutamate synthase (NADH) large subunit.
  
 
 0.897
SCL47222.1
NADH dehydrogenase subunit E.
  
 0.877
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.847
SCL60529.1
NADH:ubiquinone oxidoreductase, NADH-binding subunit (chain F).
   
 0.836
SCL47225.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.829
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.823
SCL62916.1
Sulfate adenylyltransferase.
     
 0.821
SCL64731.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
   
 
 0.809
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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