STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59430.1Low temperature requirement protein LtrA. (435 aa)    
Predicted Functional Partners:
SCL59435.1
Transcriptional regulator, GntR family; Manually curated.
 
     0.665
SCL45929.1
Protein of unknown function.
  
     0.623
SCL53023.1
Peptidase_C39 like family protein.
  
     0.596
SCL50585.1
Replication-relaxation.
  
     0.567
SCL58948.1
Peptidase_C39 like family protein.
  
     0.542
SCL50658.1
Replication-relaxation.
  
     0.533
SCL64805.1
Hypothetical protein.
  
     0.471
SCL49458.1
Hypothetical protein.
  
     0.462
SCL55065.1
Conserved hypothetical protein.
  
     0.456
SCL59441.1
Uncharacterized membrane protein YczE.
       0.439
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.