STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59657.1Spheroidene monooxygenase. (245 aa)    
Predicted Functional Partners:
SCL59664.1
Putative membrane protein.
 
   
 0.949
SCL59671.1
Phytoene desaturase.
 
  
 0.926
SCL59667.1
Glycosyltransferase like family 2.
 
   
 0.870
SCL59660.1
Acetyltransferase (GNAT) family protein.
     
 0.830
SCL53407.1
Protein of unknown function.
  
     0.618
SCL46760.1
Phytoene desaturase.
 
  
 0.546
SCL46767.1
Phytoene synthase.
 
  
 0.541
SCL59653.1
Hypothetical protein.
       0.528
SCL50137.1
Magnesium chelatase subunit I.
 
  
 0.496
SCL57996.1
Methyltransferase, FkbM family.
  
  
  0.416
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.