STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59821.1Diguanylate cyclase/phosphodiesterase. (604 aa)    
Predicted Functional Partners:
SCL46951.1
Signal transduction histidine kinase.
  
 0.999
SCL50179.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.996
SCL63509.1
Diguanylate cyclase/phosphodiesterase.
 
0.996
SCL63790.1
HAMP domain-containing protein.
   
 0.977
SCL51622.1
Signal transduction histidine kinase.
 
 0.975
SCL49889.1
Diguanylate cyclase/phosphodiesterase.
 
0.956
SCL45928.1
Diguanylate cyclase/phosphodiesterase.
 
0.955
SCL65189.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.952
SCL56823.1
MHYT domain-containing protein, NO-binding membrane sensor.
   
 0.926
SCL49149.1
Diguanylate cyclase (GGDEF) domain-containing protein.
0.921
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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