STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL59937.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
SCL59934.1
Zn-dependent protease (includes SpoIVFB).
       0.860
SCL65280.1
Putative tRNA adenosine deaminase-associated protein.
  
     0.681
SCL47383.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.630
SCL52507.1
Streptomyces sporulation and cell division protein, SsgA.
  
     0.594
SCL45356.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.557
SCL45819.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.557
SCL51368.1
Hypothetical protein.
  
     0.550
SCL49103.1
Hypothetical protein.
  
     0.525
SCL59939.1
Hypothetical protein.
       0.495
cobS
Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
       0.480
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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