STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60005.1Hypothetical protein. (604 aa)    
Predicted Functional Partners:
SCL49385.1
Hypothetical protein.
  
     0.675
SCL51785.1
Hypothetical protein.
  
     0.663
SCL63283.1
Hypothetical protein.
  
    0.639
SCL50585.1
Replication-relaxation.
  
     0.632
SCL46374.1
Pyridoxamine 5'-phosphate oxidase; Manually curated.
  
     0.616
SCL45362.1
Hypothetical protein.
  
     0.615
SCL45824.1
Hypothetical protein.
  
     0.615
SCL50658.1
Replication-relaxation.
  
     0.609
SCL60248.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.604
SCL58577.1
Fibronectin type III domain-containing protein.
  
     0.590
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.