STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60043.1Protein of unknown function. (560 aa)    
Predicted Functional Partners:
SCL60049.1
Transcriptional regulator, XRE family with cupin sensor; Manually curated.
       0.774
SCL60059.1
Alpha-1,6-mannosyltransferase.
  
  
0.699
SCL50510.1
Alpha-1,2-mannosyltransferase.
 
   
 0.588
SCL45912.1
Protein of unknown function.
  
   
 0.578
SCL51717.1
Alpha-1,2-mannosyltransferase.
  
   
 0.565
SCL60053.1
Thioredoxin reductase.
     
 0.561
SCL45964.1
Uncharacterized membrane protein.
 
     0.559
SCL59056.1
Cytochrome c oxidase assembly protein subunit 15.
 
   
 0.557
SCL61243.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
 
 0.551
SCL56520.1
L,D-transpeptidase catalytic domain.
  
     0.501
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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