STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60236.1Hypothetical protein. (245 aa)    
Predicted Functional Partners:
SCL60226.1
Probable phosphoglycerate mutase.
  
  
 0.984
SCL60241.1
Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.893
SCL65173.1
Hypothetical protein.
    
   0.769
SCL50179.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 
  0.657
SCL63790.1
HAMP domain-containing protein.
    
  0.627
SCL61599.1
L-threonine O-3-phosphate decarboxylase.
     
 0.598
SCL56853.1
Proteasome accessory factor B.
  
     0.591
SCL57502.1
Hypothetical protein.
  
  
 0.578
SCL64386.1
Protein of unknown function.
  
     0.541
SCL59884.1
Response regulator receiver protein.
  
     0.534
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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