STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60248.1Transcriptional regulator, contains XRE-family HTH domain. (407 aa)    
Predicted Functional Partners:
SCL60246.1
Flavoprotein.
 
    0.861
SCL64930.1
Hypothetical protein.
  
     0.731
SCL60252.1
Bifunctional DNA primase/polymerase, N-terminal.
 
     0.727
SCL61571.1
Putative sensory transduction regulator; Manually curated.
  
     0.707
SCL64927.1
AAA-like domain-containing protein.
  
     0.666
SCL49879.1
Protein of unknown function.
  
     0.656
SCL46708.1
Hypothetical protein.
  
     0.653
SCL64947.1
FtsK/SpoIIIE family protein.
  
     0.645
SCL56210.1
TIGR03083 family protein.
  
     0.638
SCL45929.1
Protein of unknown function.
  
     0.637
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.