STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60346.1Choice-of-anchor B domain-containing protein. (429 aa)    
Predicted Functional Partners:
SCL60349.1
Hypothetical protein.
       0.803
SCL56929.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.664
SCL48960.1
Protein of unknown function.
  
     0.633
SCL53921.1
Cellulose binding domain-containing protein.
  
     0.501
SCL50471.1
Hypothetical protein.
  
  
  0.478
SCL63838.1
Phospholipase A2.
  
     0.476
SCL65213.1
Protein of unknown function.
  
     0.471
SCL55035.1
Alpha-L-arabinofuranosidase B (ABFB) domain-containing protein.
  
     0.468
SCL62221.1
RHS repeat-associated core domain-containing protein.
  
  
  0.463
SCL55141.1
Lysophospholipase L1.
  
     0.458
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.