STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60422.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
SCL60430.1
iron(III) transport system permease protein.
 
     0.845
SCL60433.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.807
SCL60426.1
Creatinine amidohydrolase.
       0.778
SCL60420.1
Argininosuccinate lyase.
 
     0.645
SCL60879.1
Regulator of RNase E activity RraA.
    
 0.644
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.615
SCL57800.1
Ferredoxin-NADP reductase.
    
  0.615
SCL60417.1
Glucokinase.
       0.572
SCL52483.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
  
 0.549
SCL60436.1
iron(III) transport system substrate-binding protein.
 
     0.547
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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