STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60491.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
SCL60495.1
Threonine dehydrogenase.
 
    0.843
SCL58946.1
Hypothetical protein.
  
     0.549
SCL65916.1
Helix-turn-helix.
  
     0.544
SCL56092.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.527
SCL53327.1
Mn2+ and Fe2+ transporters of the NRAMP family.
  
     0.522
SCL60488.1
Regulatory protein, luxR family; Manually curated.
       0.509
SCL49836.1
HNH endonuclease.
 
     0.480
SCL52930.1
Hypothetical protein.
  
     0.479
SCL61219.1
Hypothetical protein.
  
     0.427
SCL61367.1
Protein of unknown function.
 
     0.400
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.