STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60509.1Saccharopine dehydrogenase (NAD+, L-glutamate forming). (390 aa)    
Predicted Functional Partners:
SCL57271.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
 
   
 0.648
SCL65029.1
Transcriptional regulator, TetR family.
  
     0.602
folE
GTP cyclohydrolase I.
 
      0.585
SCL60505.1
Hypothetical protein.
   
   0.455
SCL60513.1
DNA polymerase III beta subunit, C-terminal domain.
       0.444
SCL46610.1
MaoC like domain-containing protein.
  
    0.442
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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