SCL60552.1 protein (Micromonospora yangpuensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCL60552.1

Protein of unknown function. (66 aa)

Predicted Functional Partners:

SCL60547.1

0.901

SCL61356.1

0.646

SCL50626.1

0.624

SCL49424.1

0.616

SCL50762.1

0.595

SCL51134.1

0.583

SCL50720.1

0.579

SCL52600.1

0.578

SCL47991.1

0.574

SCL48666.1

0.574

Your Current Organism:

Micromonospora yangpuensis

NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCL47991.1	SCL48666.1	GA0070617_0742	GA0070617_0942	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.505
SCL47991.1	SCL60552.1	GA0070617_0742	GA0070617_4413	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.574
SCL47991.1	SCL61356.1	GA0070617_0742	GA0070617_4640	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.762
SCL48666.1	SCL47991.1	GA0070617_0942	GA0070617_0742	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.505
SCL48666.1	SCL49424.1	GA0070617_0942	GA0070617_1178	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.621
SCL48666.1	SCL50626.1	GA0070617_0942	GA0070617_1541	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.535
SCL48666.1	SCL50762.1	GA0070617_0942	GA0070617_1589	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.577
SCL48666.1	SCL51134.1	GA0070617_0942	GA0070617_1691	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.536
SCL48666.1	SCL52600.1	GA0070617_0942	GA0070617_2125	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.593
SCL48666.1	SCL60547.1	GA0070617_0942	GA0070617_4412	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.637
SCL48666.1	SCL60552.1	GA0070617_0942	GA0070617_4413	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.574
SCL48666.1	SCL61356.1	GA0070617_0942	GA0070617_4640	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.626
SCL49424.1	SCL48666.1	GA0070617_1178	GA0070617_0942	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.621
SCL49424.1	SCL60552.1	GA0070617_1178	GA0070617_4413	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.616
SCL49424.1	SCL61356.1	GA0070617_1178	GA0070617_4640	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.767
SCL50626.1	SCL48666.1	GA0070617_1541	GA0070617_0942	Hypothetical protein.	Helix-turn-helix domain-containing protein.	0.535
SCL50626.1	SCL60552.1	GA0070617_1541	GA0070617_4413	Hypothetical protein.	Protein of unknown function.	0.624
SCL50720.1	SCL60552.1	GA0070617_1572	GA0070617_4413	Hypothetical protein.	Protein of unknown function.	0.579
SCL50762.1	SCL48666.1	GA0070617_1589	GA0070617_0942	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.577
SCL50762.1	SCL60552.1	GA0070617_1589	GA0070617_4413	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.595

page 1 of 3

Server load: medium (42%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About