STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60643.1Alpha-amylase. (623 aa)    
Predicted Functional Partners:
SCL57132.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.912
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.891
SCL57128.1
(1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase.
  
 
 0.879
SCL62277.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
  
  
0.863
SCL53553.1
Hypothetical protein.
  
 0.821
SCL56046.1
Amino acid/polyamine/organocation transporter, APC superfamily.
  
  0.806
SCL61854.1
Alpha-glucosidase; Non-canonical start codon; manually curated.
 
  
  0.792
SCL48311.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.779
SCL48656.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3).
   
  0.779
SCL52086.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.779
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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