STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60704.1TraM recognition site of TraD and TraG. (600 aa)    
Predicted Functional Partners:
SCL60712.1
Hypothetical protein.
 
   
 0.968
SCL60708.1
AAA-like domain-containing protein.
 
  
 0.959
SCL60714.1
Hypothetical protein.
 
     0.906
SCL60718.1
Hypothetical protein.
 
     0.895
SCL60737.1
Hypothetical protein.
 
     0.842
SCL60744.1
Protein of unknown function.
 
     0.813
SCL58074.1
Protein of unknown function.
 
 
 
 0.643
SCL46741.1
Protein of unknown function.
 
 
 
 0.623
SCL62361.1
NTE family protein.
    
   0.609
SCL60720.1
Hypothetical protein.
       0.600
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.