STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60737.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
SCL60714.1
Hypothetical protein.
 
     0.908
SCL60718.1
Hypothetical protein.
 
     0.907
SCL60712.1
Hypothetical protein.
 
     0.877
SCL60708.1
AAA-like domain-containing protein.
 
     0.876
SCL60744.1
Protein of unknown function.
 
     0.871
SCL60704.1
TraM recognition site of TraD and TraG.
 
     0.842
SCL60724.1
Hypothetical protein.
       0.803
SCL50617.1
NACHT domain-containing protein.
  
     0.656
SCL48139.1
Hypothetical protein.
  
     0.614
SCL60720.1
Hypothetical protein.
       0.609
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.