STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60741.1Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain. (425 aa)    
Predicted Functional Partners:
SCL59276.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.905
SCL60744.1
Protein of unknown function.
       0.658
SCL60724.1
Hypothetical protein.
       0.505
SCL60737.1
Hypothetical protein.
       0.505
SCL62510.1
Biotin-requiring enzyme.
    
  0.471
SCL53042.1
L-2-hydroxyglutarate oxidase.
    
  0.440
SCL60765.1
Subtilase family protein.
  
  
  0.417
SCL58321.1
Metal-dependent hydrolase, beta-lactamase superfamily II.
  
     0.409
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.