STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60829.1Transcriptional regulator, PaaX family. (335 aa)    
Predicted Functional Partners:
SCL60833.1
Esterase, PHB depolymerase family.
 
     0.607
SCL47131.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
  
 0.602
SCL47125.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
  
 0.557
SCL47135.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
   
 0.556
SCL47129.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
   
 0.517
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.499
SCL54863.1
Hypothetical protein.
  
     0.486
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
   
 0.435
SCL55373.1
Hypothetical protein.
  
     0.426
SCL60826.1
Membrane dipeptidase.
       0.423
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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