STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60859.1Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain. (381 aa)    
Predicted Functional Partners:
SCL59798.1
Glucokinase.
 
  
 
0.715
SCL60881.1
Transketolase.
  
 
 0.653
SCL53150.1
Phosphoglucomutase.
     
 0.588
SCL60855.1
Peptide/nickel transport system substrate-binding protein.
       0.566
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.558
SCL56711.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
  
  
 0.557
SCL60872.1
FAD-linked oxidoreductase.
 
  
  0.557
SCL60875.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
    
  0.530
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.524
SCL50015.1
Mannose-6-phosphate isomerase, type 1.
  
 
 0.518
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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