STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60872.1FAD-linked oxidoreductase. (462 aa)    
Predicted Functional Partners:
SCL60868.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
    
  0.804
SCL59876.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
    
  0.793
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
   0.791
SCL47405.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
    0.783
SCL60861.1
NADPH2:quinone reductase.
       0.773
SCL60875.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.773
SCL60879.1
Regulator of RNase E activity RraA.
       0.773
SCL59368.1
Glutamate synthase (NADH) large subunit.
    
 0.762
SCL60881.1
Transketolase.
  
 
 0.703
SCL60884.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.677
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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