STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60888.1Sialic acid synthase. (364 aa)    
Predicted Functional Partners:
SCL52976.1
Spore coat polysaccharide biosynthesis protein SpsG, predicted glycosyltransferase.
 
 
 0.929
SCL52981.1
Spore coat polysaccharide biosynthesis protein SpsF.
 
  
 0.893
SCL60884.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.810
SCL52994.1
UDP-N-acetylglucosamine 4,6-dehydratase.
 
 
 0.791
SCL60881.1
Transketolase.
 
 
   0.745
SCL60902.1
ATP-grasp domain-containing protein.
     
 0.711
SCL60892.1
Hypothetical protein.
       0.701
SCL60895.1
Hypothetical protein.
       0.701
SCL60899.1
Predicted arabinose efflux permease, MFS family.
       0.701
SCL60875.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
    0.645
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.