STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61036.1Sugar phosphate isomerase/epimerase. (309 aa)    
Predicted Functional Partners:
SCL61033.1
Hypothetical protein.
     0.996
SCL61041.1
4-hydroxybenzoate polyprenyltransferase.
 
     0.974
SCL61043.1
Myo-inositol-1-phosphate synthase.
 
     0.974
SCL61021.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
 
     0.971
SCL61030.1
Hypothetical protein.
 
  
 0.971
SCL61025.1
Xylose isomerase-like TIM barrel.
 
     0.963
SCL55541.1
L-ribulose 5-phosphate 4-epimerase.
  
 
  0.855
SCL61016.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
       0.839
SCL55116.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.758
SCL63064.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.752
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.