STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61046.1Predicted dehydrogenase. (404 aa)    
Predicted Functional Partners:
SCL61050.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
    0.877
SCL57064.1
Predicted dehydrogenase.
  
  
  0.868
SCL61014.1
Sugar phosphate isomerase/epimerase.
 
 
  0.843
SCL52049.1
Myo-inositol-1(or 4)-monophosphatase.
    
  0.672
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 0.629
SCL60842.1
Sugar phosphate isomerase/epimerase.
  
 
  0.607
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
  0.589
SCL61059.1
ROK family protein (putative glucokinase).
 
     0.552
SCL61052.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.551
SCL61056.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
    0.534
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.