STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61059.1ROK family protein (putative glucokinase). (392 aa)    
Predicted Functional Partners:
SCL61052.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.802
SCL61056.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
       0.778
SCL60417.1
Glucokinase.
  
 
 
0.711
SCL59798.1
Glucokinase.
  
 
 
0.708
SCL49645.1
PKD domain-containing protein.
 
  
  0.707
SCL63821.1
Polyphosphate glucokinase.
   
 
 0.707
SCL59082.1
Glucose-6-phosphate isomerase; Belongs to the GPI family.
 
  
 0.699
SCL63064.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
  
  0.697
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.684
SCL63306.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
    
  0.683
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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