STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61066.1Lipooligosaccharide transport system permease protein. (269 aa)    
Predicted Functional Partners:
SCL61072.1
Lipooligosaccharide transport system ATP-binding protein.
 
 
  0.984
SCL61069.1
Lipooligosaccharide transport system permease protein.
 
  
 
0.888
SCL54810.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.736
SCL61076.1
Hypothetical protein.
       0.592
SCL61062.1
Membrane protein.
       0.586
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.583
SCL55407.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.568
SCL52677.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.556
SCL48150.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
  
    0.541
SCL54676.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.538
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.