STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61118.1Transcriptional regulator, GntR family. (227 aa)    
Predicted Functional Partners:
SCL61116.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
     0.835
SCL61106.1
Putative tricarboxylic transport membrane protein.
 
     0.821
SCL61099.1
4-hydroxy-tetrahydrodipicolinate synthase.
       0.779
SCL61104.1
Predicted neuraminidase (sialidase).
       0.773
SCL61111.1
Tripartite tricarboxylate transporter TctB family protein.
       0.773
SCL55025.1
DNA-binding transcriptional regulator, GntR family.
  
     0.769
SCL48041.1
Transcriptional regulator, GntR family.
  
  
 0.761
SCL54201.1
Transcriptional regulator, GntR family.
  
     0.752
SCL61093.1
Xylulokinase; Belongs to the FGGY kinase family.
  
    0.715
SCL61097.1
L-fucose isomerase.
       0.705
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.