STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61129.1Pyruvate phosphate dikinase. (870 aa)    
Predicted Functional Partners:
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.895
SCL62402.1
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.848
SCL60327.1
2-oxoisovalerate dehydrogenase E1 component.
    
 0.791
SCL60808.1
2-oxoisovalerate dehydrogenase E1 component.
    
 0.791
SCL59368.1
Glutamate synthase (NADH) large subunit.
  
  
 0.783
SCL62926.1
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
 
 
 0.776
SCL54895.1
Pyruvate dehydrogenase E1 component beta subunit.
    
 0.770
SCL54899.1
Pyruvate dehydrogenase E1 component alpha subunit.
    
 0.770
ppc
Phosphoenolpyruvate carboxylase, type 1; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.764
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 0.764
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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