STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61131.1Hexosaminidase. (601 aa)    
Predicted Functional Partners:
SCL59712.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.911
SCL50925.1
beta-N-acetylhexosaminidase.
    
 0.868
SCL53477.1
beta-N-acetylhexosaminidase.
    
 0.868
SCL60449.1
beta-N-acetylhexosaminidase.
    
 0.868
SCL50405.1
Histidine ammonia-lyase.
   
    0.777
SCL57047.1
Hypothetical protein.
    
 0.580
SCL54235.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
   
 0.573
SCL58733.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
   
 0.573
SCL50314.1
Hypothetical protein.
     
 0.569
SCL55171.1
Alpha-galactosidase.
  
  
 0.548
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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