STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61227.1Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (270 aa)    
Predicted Functional Partners:
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.945
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
 
  
 0.929
SCL47255.1
Heptaprenyl diphosphate synthase; Manually curated; Belongs to the FPP/GGPP synthase family.
 
 
 0.925
SCL61016.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
 
 0.892
SCL59683.1
Geranylgeranyl diphosphate synthase, type I; Manually curated; Belongs to the FPP/GGPP synthase family.
 
 
 0.888
SCL49576.1
Short-chain Z-isoprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 
0.886
SCL51497.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
  
 0.882
SCL46763.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
 
 0.858
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.856
SCL48078.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 
 0.814
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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