STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61240.1Putative adhesin. (286 aa)    
Predicted Functional Partners:
SCL59838.1
Putative adhesin.
 
 
  0.627
SCL51742.1
Streptogrisin C.
  
   0.622
SCL58716.1
Cell wall-active antibiotics response 4TMS YvqF.
  
  
 0.611
SCL63354.1
Protein of unknown function.
  
  
 0.611
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.588
SCL61227.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.556
SCL51781.1
Phage shock protein A (PspA) family protein.
  
  
 0.549
SCL50184.1
Hypothetical protein.
    
   0.546
SCL53639.1
Protein of unknown function.
   
   0.546
SCL53714.1
Streptogrisin D.
   
   0.546
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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