STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61243.1Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. (391 aa)    
Predicted Functional Partners:
SCL62423.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
 0.971
SCL50179.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.961
SCL63509.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.956
SCL56060.1
Thioesterase domain-containing protein.
  
 
 0.927
SCL50116.1
GtrA-like protein.
  
 
 0.904
SCL45928.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.877
SCL49889.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.877
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.871
SCL56057.1
Phosphopantetheine attachment site.
  
 
 0.854
SCL59712.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
    
 0.853
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.